Install Jupyter Lab in OCI

2 Prerequisites

You’ll need a Virtual Machine 2.1 with Oracle Linux 7.9 (OEL7) deployed in Oracle Cloud Infrastructure (OCI).

• Oracle Linux 7.9 using pip3.6 by default.
• Python 3.6 or higher installed
• Access to root, either directly or via sudo. By default in OCI, you are connected as the “opc” user with sudo privilege.

The install is pretty simple. It consists of setting up python and installing python components and libraries.

Lets start with setting up the Python Environment

3 Python Setup

By default, OEL7 runs Python 3. The first step is to install pip and virtualenv.

1. Install virtualenv

   Virtualenv enables us to create isolated sandboxes for developing Python applications without running into module or library conflicts. It’s very simple to install:

    sudo pip3.6 install virtualenv
   
                       

2. Next we can create a virtual environment called “myvirtualenv”

    virtualenv -p /usr/bin/python3 myvirtualenv
   
                        # Activate the env
                        source myvirtualenv/bin/activate
                       

3. Check list of Python Libraries in your environment

   Running the following command will show what Python models we have installed at this point.

    (myvirtualenv)$ pip3 list
   
                        Package    Version
                        ---------- -------
                        pip        21.1.3
                        setuptools 57.1.0
                        wheel      0.36.2
                        WARNING: You are using pip version 21.1.3; however, version 21.2.1 is available.
                        You should consider upgrading via the '/home/opc/myvirtualenv/bin/python -m pip install --upgrade pip' command.
                       

4. Upgrade your PIP Environment for this virtual environment:

    /home/opc/myvirtualenv/bin/python -m pip install --upgrade pip
   
                       

4 Jupyter Lab Setup

1. Use pip to install Jupyter Lab:

    pip3 install jupyterlab
   
                       

2. Install Python Libraries for Machine Learning or ETL Process:

    pip install pandas
   
                        pip install pandarallel
                        pip install dask
                        pip install seaborn
                        pip install matplotlib
                        pip install plotly
                           
                        pip install -lxml==4.6.3
                        pip install selenium
                        pip install beautifulsoup4
                           
                        pip install scikit-learn
                       

3. Install other Python libraries for Kafka Access and WEB Server Access:

    pip install kafka-python (v2.0.0)
   
                        pip install Flask
                        pip install gunicorn
                       

4. Install extensions for Jupyter Lab environment:

    pip install jupyter_contrib_nbextensions
   
                        jupyter contrib nbextension install --user
                        jupyter nbextension enable execute_time/ExecuteTime
                       

5 Configure Jupyter Lab like an OEL7 Linux Service

1. Create a script to instantiate automatically and reboot jupyterlab with the opc user.

    vi /home/opc/launchjupyterlab.sh
   
                       

2. Add the contents below to launchjupyterlab.sh. You must use the virtualenv you created, and you can launch Jupyter Lab on a specific port (for example: 8001) and listen on your VM’s public IP.

    #!/bin/bash
   
                           
                        # Activate myvirtualenv Environment
                        source myvirtualenv/bin/activate
                           
                        cd /home/opc
                           
                        if [ "$1" = "start" ]; then
                            nohup jupyter-lab --ip=0.0.0.0 --port=8001 > ./nohup.log 2>&1 &
                            echo $! > /home/opc/jupyter.pid
                        else
                            kill $(cat /home/opc/jupyter.pid)
                        fi
                       

3. Make the script executable so it can be run from the jupyterlab service:

    chmod 777 /home/opc/launchjupyterlab.sh
   
                       

4. Connect to “root” user:

    sudo -i
   
                       

5. Create a script to start and stop the “jupyterlab” service:

    vi /etc/systemd/system/jupyterlab.service
   
                       

6. Add the following to jupyterlab.service:

    [Unit]
   
                        Description=Service to start jupyterlab for opc
                        Documentation=
                        [Service]
                        User=opc
                        Group=opc
                        Type=forking
                        WorkingDirectory=/home/opc
                        ExecStart=/home/opc/launchjupyterlab.sh start
                        ExecStop=/home/opc/launchjupyterlab.sh stop
                        [Install]
                        WantedBy=multi-user.target
                       

7. Test the Jupyter Lab Service

    systemctl start jupyterlab
   
                        systemctl status jupyterlab
                        systemctl enable jupyterlab
                       

6 Reboot your VM

1. Reboot your machine to check if jupyterlab script is enabled by default on port we defined (8001).

2. Open port 8001 to your virtual machine VM 2.1 so you can access Jupyter Lab using your Public IP.

    firewall-cmd  --permanent --zone=public --list-ports
   
                        firewall-cmd --get-active-zones
                        firewall-cmd --permanent --zone=public --add-port=8001/tcp
                        firewall-cmd --reload
                       

3. If you’re running directly on a virtual machine and have a browser installed, it should take you directly into the Jupyter environment. Connect to http://xxx.xxx.xxx.xxx:8001/ (replacing xxx with your public IP).

You should now see the Python Web environment “Jupyter Lab”.